Notes
Outline
ANATOMY OF ELECTRON MICROSCOPES
ADVANTAGES OF THE EM
Very high magnification
Best LM, perhaps 1500x
First-generation TEM, 50,000x
Current instruments > 300,000x
More limited on biological specimens
Very high resolution
Much more important than magnification!
Best LM, 0.1 mm
First-generation TEMs, < 20 Å (200 nm)
Current instruments < 3.0 Å
TWO TYPES OF EMs
TRANSMISSON electron microscope
SCANNING electron microscope
Similar in principles, to some extent
Different in operation, capabilities & applications
"RELATIVE SIZE SCALE:"
RELATIVE SIZE SCALE:
Mark I Eyeball, 0.5 mm
LM, »0.1 mm
TEM,
<1.0 nm
MAGNIFICATION & RESOLUTION
THE TRANSMISSION EM
Most often used in life sciences
Similar to LM in layout
Optical principles  and formulae same as LM
EM SYSTEMS
COLUMN
Illuminating system
Imaging system
Camera system
VACUUM SYSTEM
Pumps & cooling apparatus
CONTROL SYSTEM
Interface between operator & electronics
COMPARISON: LM & TEM
TEM has same basic layout
Usually “inverted” compared to LM
Differ in many details!
LAYOUT OF A TYPICAL TEM
THE COLUMN
Electron Gun
Filament
Cathode cap
Anode
Gun aperture
Condenser lenses
Stigmator
Condenser aperture
THE COLUMN
Specimen stage
Side entry
Top entry
Objective lens
Objective aperture
Objective stigmator
Intermediate lens
Projector Lens
Viewing chamber
COLUMN COMPONENTS
I. THE ELECTRON GUN
ELECTRON GUN COMPONENTS
CATHODE
Filament is the cathode
CATHODE CAP
Filament cap, “Wehnelt Cylinder”
More negative than filament
ANODE PLATE
At ground potential (0 volts)
ELECTRON GUN
THE FILAMENT
Source of electrons
Usually tungsten
Sometimes not
LaB6 most common alternative
Filament life important indicator
FUNCTIONING OF THE E-GUN
(Thermionic emission)
Voltage across gun is 50kV to 200 kV
Resistance is very high
Current is in microamps
Filament heated white-hot with DC
Electrons excited out of outermost orbital shell
Leave filament at tip
GUN BIAS
Most guns are SELF-BIASED
“Bias” is D between filament & cap
Cap is connected directly to – term of high-voltage line
Filament is connected through a resistor
GUN BIAS
Because cap is more negative than filament, electrons are repulsed from it
Centers the first beam & regulates escape from cap
As accelerating voltage ­ the bias also ­ due to wiring
At saturation, no more electrons escape even with ­ filament current
SATURATION
As filament temp ­ emission of electrons ­ as well
Too high a temp will shorten life
SATURATION is optimum balance between electron yield and filament life
PRINCIPLE OF THE LENS
Rays passing through are brought to coincidence at the focal point
IMAGE FORMATION
Rays from objects at back focal point are projected into a plane
NUMERICAL APERTURE
A measure of resolving power
Formula:
n (sin a)
Where:
n is refractive index of the medium
In a vacuum = 1.0
a is the aperture angle of the lens
APERTURE ANGLE
The half-angle of illumination a lens can accept
As aperture size decreases, so does a
As aperture size decreases, resolution increases
ELECTRON LENSES
Obey the same laws of optics as glass lenses
Are subject to the same defects
Carry out the same functions in a compound TEM as in a compound LM
Differ in structure and operation
ELECTRON LENSES
POLEPIECES
Function to strengthen magnetic field
Soft iron core
North and South poles
Gap of non-magnetic material
Source of astigmatism
Machining is never perfect
PRINCIPLE OF ELECTRON LENS
Electrons are charged
Pass through a magnetic field in a spiral about the field axis
Strength of field determines focal length and plane
FOCUSING ELECTRONS
Beam displays wave behavior
Can calculate l for the beam
Adjusting FL adjusts focal plane
WAVELENGTH
Wavelength (l) is the key to high resolution!
l is the distance between two “peaks” of a wave
Electron beams are particulate but have l!
FORMULA FOR RESOLUTION OF ANY LENS
                 r = 0.612 x l
                     NA
Where:
is the illuminating wavelength
NA is Numerical Aperture of the lens
DE BROGLIE’S EQUATION
Formula to calculate the wavelength of an electron…and an electron beam:
 l = h/mv
Where:
h = Planck’s constant (6.626 x 10-23 ergs/sec)
m = mass of the electron
v = electron velocity
DE BROGLIE’S EQUATION
Simplified version:
                    l = 1.23
                         Ö V
Where V = accelerating voltage
Hence as voltage increases, l decreases and resolution improves
RESOLUTION
                r = 0.612 x l
                     NA
Where:
is the illuminating wavelength
NA is Numerical Aperture of the lens
TOTALLY INDEPENDENT OF MAGNIFICATION!
DEPTH OF FIELD/FOCUS
Distance between closest and farthest point of acceptable focus
Applies to specimen (Depth of field) and to image (Depth of focus)
Controlled with apertures
Smaller apertures have greater depth
DEPTH OF FIELD/FOCUS
CALCULATING DEPTH OF FIELD
Df = l
___________
Sin a
Where l = Wavelength of illumination
            a = Aperture angle
Hence smaller apertures enhance DOF
CONDENSER LENS(ES)
Focuses e-beam on specimen
Typical 2-lens system:
Lens C1 demagnifies “spot” from gun
Lens C2 enlarges “spot”
Controls aberrations and illumination level
Illuminates only are being examined
Minimizes damage and contamination
ACTION OF CONDENSER LENS
Spot size is adjusted with CL current control
High mag requires small spot size: but…
Small spots are dim!
­ Aperture angle due to ¯ focal length
Loss of electrons
IMAGING LENSES
OBJECTIVE LENS
Makes primary image
Most important lens
1-2 mm focal length
Least variable in strength
Image is improved with objective aperture
IMAGING LENSES
INTERMEDIATE LENS
Part of two-stage magnification system
Receives image from Objective
Increases magnification
PROJECTOR LENS(ES)
Creates final level of magnification
P1 and P2 used in various combinations for final magnification
Designed for great depth of focus
LENS ABERRATIONS
CHROMATIC ABERRATION
SPHERICAL ABERRATION
ASTIGMATISM
Result in defects of image and loss of resolution in the image
CHROMATIC ABERRATION
Waves of different l are brought to a focus at different points; resolution degraded
SPHERICAL ABERRATION
Peripheral rays refracted more than central ones
Degraded focus as a “spot” not a “point”
Controlled with apertures
Smaller apertures have less SA
EFFECT OF SPHERICAL ABERRATION
Pincushion distortion
Edges more magnified than center
Barrel distortion
Center more magnified than edges
Can offset each other
Most projector lens systems do this
ASTIGMATISM
Most serious lens defect
Results from asymmetric magnetic field in the lens(es)
Different focal lengths in different planes
Inherent in all lens assemblies
Correctable with STIGMATORS
CORRECTING ASTIGMATISM
Astigmatism due to distorted field(s)
Usually due to manufacturing tolerances
Correction is by induction of counterdistortions
Equal in strength
Opposite in direction
Done with STIGMATOR devices
STIGMATORS
May be mechanical, or electromagnetic
Used on all lenses in the system
Objective stigmator most often used
STIGMATOR
HOLEY FILMS
Thin collodion film
Holes of various sizes
Used to check astigmatism on daily basis
Can be made or purchased
CORRECTING ASTIGMATISM
A: No astigmatism
B: Astigmatic condition
C: Focus changed to direct astigmatism 90°
Equal strength, opposite direction
D: Corrected condition
CONTRAST
TEM uses “subtractive” method of contrast
Dense materials scatter electrons
Contrast depends on imparting differences in density in the specimen
Apertures increase contrast
ROLE OF APERTURES
APERTURE HOLDER
APERTURE IN USE
SPECIMEN CARRIER
Top or side entry
Side entry usually carries 2-6 specimens
Top entry less versatile
SIDE ENTRY STAGE
TOP ENTRY STAGE
VACUUM SYSTEMS
Why a vacuum?
Filament
Low electron mass
Contamination
UNITS OF VACUUM
ATMOSPHERE
760 mm Hg
TORR
1 Torr = 1.32x10-3 ATM
1 Torr = 1mm Hg
PASCAL
International Std
1 P = 9.92x10-6 ATM
1 P = 7.42x10-3 Torr
133 Pascals per Torr
VACUUM SYSTEM COMPONENTS
Rough pump (forepump, mechanical pump)
Removes bulk of air from the column
Rotary oil-bath most common type
MECHANICAL PUMP FUNCTION
Rotating vanes create vacuum on one side
Exhausted air is driven out the other side
Oil bath for cooling and lubrication
VACUUM SYSTEM COMPONENTS
Diffusion Pump
Finishes job of removing air
Exhausts to rotary pump
Will pull final vaccum of 10-5 to 10-7m Torr in modern scopes
DIFFUSION PUMP CUTAWAY
DIFFUSION PUMP FUNCTION
Water cooled
Oil boiled and directed up & out by vanes
Condensation on sides
Air molecules drift down and are removed
TURBOMOLECULAR PUMPS
Work like a jet engine in reverse
Moving rotors alternate with stators
“Sweep” air molecules out
Advantages over conventional pumps
Oil-less
No cooling lines & minimal venting
VACUUM GAUGES
THERMOCOUPLE GAUGE
Measures temperature of a wire
As air removed, ­ insulation of ­ vacuum ­ wire temperature
Gauge correlates temperature and vaccum
VACUUM GAUGES
COLD CATHODE GAUGE
High voltage ionizes gas molecules
Drawn to cathode
Ion current is read & translated to vacuum units
VACUUM GAUGES
IONIZATION GAUGE
Heated wire emits electrons
Electrons drawn to grid (+ charged)
Gas molecules ionized by “beam”
Gas ions drawn to central wire, current proportional to number of gas molecules
Useful in high-vacuum situations
VACUUM SYSTEMS
Column, camera, specimen port isolated by airlocks
Undesirable to vent entire system
Column normally under vacuum at all times
ROUGH PUMPING AT STARTUP
OPERATING CONDITION
Air inlet closed
Main valve open
Column completely
evacuated
Rotary pump backs oil pump
Camera & specimen airlocks open
FILM EXCHANGE
Air inlet open
Camera lock closed
Camera backing valve closed
Diffusion pump on column
ROUGHING THE CAMERA
Camera door closed
Air inlet closed
Camera valve closed
Backing valve closed
OPERATING CONDITION
Air inlet closed
Column evacuated
Rotary pump backs oil pump
Camera & specimen airlocks open
Slide 75
MICROSCOPE ALIGNMENT
No lens or polepiece is perfect: optical & physical axes usually not in the same place
Alignment is necessary for optimal quality of images & convenient operation
Definition:
Condition in which the optical axes of lenses are coaxial; all apertures are physically centered WRT the optical axis; and all lens astigmatism is corrected
WHEN TO ALIGN
On installation
After major cleaning or repairs
After filament replacement
TYPES OF ALIGNMENT
VOLTAGE ALIGNMENT
Filament voltage is varied
Image rotates around a central point
Lens is shifted to bring center of rotation to center of screen
CURRENT ALIGNMENT
Lens current is varied
Image rotates
Lens is shifted to bring center of rotation to center of screen
Repeated for each lens
The two rarely coincide but can be close!
VIEWING SCREEN AND CAMERA
Final portion of the column
Necessary to visualize image
Control of photographic recording
VIEWING SCREEN
Polished bronze plate
Phosphorescent coating
Glows when impinged on by electrons
Energy absorbed, lost and emitted at longer wavelengths
CAMERA
May be in vacuum
Some advantages, some drawbacks
May be external to vacuum
Not most common arrangement
Film formats standardized
EVENTS IN IMAGE CAPTURE
Electrons initiate development centers in silver halide crystals
Crystals catalyze precipitation to metallic silver
Unexposed grains do not precipitate
Development is proportional to exposure
EVENTS IN IMAGE CAPTURE
Stop bath ends further development
Unexposed grains removed by fixer
Negative image formed by precipitated metallic silver
PICTURE CREDITS
Jones & Bartlett Publishers
Chapman-Hall Inc.
Cambridge University Press
Eastman Kodak
VMRCVM Morphology Lab
University of Toronto
Dr. Ihab El-Zoghby
Dr. Amal A.M. Ahmed
JEOL Inc.